This issue is found in Version 2019 R2 Build 2353.
There is a difference between the pbt library list and the build option library list.
I get the warning: The current library list is different from the library list contained within this project. The project library has been updated. Refresh build options for the changed list and try again.
The library list (from target) is correct, but there are missing libraries in the build list. How do I refresh the build options?
Library List ok.
Build options, not ok.